Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DW150_04055 | Not Available | + | 987344 - 988780 | 53613.5 |
| acyltransferase | DW150_04060 | Not Available | + | 988780 - 989805 | 39486.3 |
| glycosyl transferase | DW150_04065 | Not Available | - | 989828 - 990658 | 31834.5 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW150_04070 | Not Available | + | 990748 - 992553 | 70241.3 |
| nad/nadp octopine/nopaline dehydrogenase | DW150_04075 | Not Available | + | 992550 - 993650 | 41133.9 |
| licd family protein | DW150_04080 | Not Available | + | 993654 - 994451 | 31702.4 |
| hemolysin activation protein | DW150_04085 | Not Available | + | 994465 - 995481 | 40425.5 |
| glycosyltransferase | DW150_04090 | Not Available | + | 995454 - 996569 | 42886.3 |
| glycosyltransferase | DW150_04095 | Not Available | + | 996582 - 997844 | 47782.6 |
| glycosyltransferase | DW150_04100 | Not Available | + | 997837 - 998583 | 28692.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
