Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | DW150_03745 | Not Available | + | 918399 - 919241 | 32125.5 |
| glycosyltransferase family 1 protein | DW150_03750 | Not Available | + | 919248 - 920366 | 42798.2 |
| glycosyltransferase family 2 protein | DW150_03755 | Not Available | + | 920363 - 921568 | 46027.1 |
| response regulator | DW150_03760 | Not Available | - | 921572 - 921928 | 13451.4 |
| response regulator | DW150_03765 | Not Available | + | 922072 - 923922 | 71075.1 |
| endonuclease | DW150_03770 | Not Available | + | 923926 - 924987 | 40601.3 |
| hybrid sensor histidine kinase/response regulator | DW150_03775 | Not Available | - | 924992 - 926131 | 42228.6 |
| sdr family nad-dependent epimerase/dehydratase | DW150_03780 | Not Available | - | 926141 - 927079 | 35423.4 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DW150_03785 | Not Available | + | 927200 - 928024 | 29231.6 |
| [acyl-carrier-protein] s-malonyltransferase | DW150_03790 | Not Available | + | 928151 - 929038 | 31280.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
