Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose 3,5-epimerase | DW150_03595 | Not Available | + | 884707 - 885276 | 21738.7 |
| chain-length determining protein | DW150_03600 | Not Available | - | 885454 - 886593 | 41408.7 |
| capsule biosynthesis protein | DW150_03605 | Not Available | - | 886601 - 889093 | 92389.3 |
| xylose isomerase | DW150_03610 | Not Available | - | 889333 - 890649 | 49038.9 |
| carbohydrate kinase | DW150_03615 | Not Available | - | 890741 - 892234 | 53459.7 |
| nudix hydrolase | DW150_03620 | Not Available | - | 892408 - 893142 | 28586.6 |
| response regulator | DW150_03625 | Not Available | + | 893497 - 893862 | 14101.4 |
| sugar transferase | DW150_03630 | Not Available | + | 893869 - 895044 | 44965.8 |
| hypothetical protein | DW150_03635 | Not Available | + | 895081 - 895944 | 32644.0 |
| hypothetical protein | DW150_03640 | Not Available | + | 895950 - 898097 | 82525.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
