Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| is1595-like element isbvu2 family transposase | DW150_00320 | Not Available | + | 107634 - 108557 | 36206.1 |
| hypothetical protein | DW150_00325 | Not Available | - | 108804 - 109256 | 17013.0 |
| hypothetical protein | DW150_00330 | Not Available | - | 109264 - 109782 | 19461.5 |
| duf4065 domain-containing protein | DW150_00335 | Not Available | + | 110007 - 110504 | 19038.6 |
| hypothetical protein | DW150_00340 | Not Available | + | 110491 - 110931 | 17018.2 |
| susc/raga family tonb-linked outer membrane protein | DW150_00345 | Not Available | + | 111173 - 112834 | 62998.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00350 | Not Available | + | 112859 - 114859 | 74609.2 |
| glycoside hydrolase family 88 protein | DW150_00355 | Not Available | + | 114925 - 116331 | 53427.8 |
| aldehyde dehydrogenase | DW150_00360 | Not Available | - | 116538 - 117974 | 52638.3 |
| hybrid sensor histidine kinase/response regulator | DW150_00365 | Not Available | - | 118166 - 122419 | 162377.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
