Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pectin esterase | DW150_00265 | Not Available | - | 87931 - 88881 | 35811.5 |
| glycoside hydrolase family 88 protein | DW150_00270 | Not Available | - | 88896 - 90125 | 47121.3 |
| pts sugar transporter subunit iic | DW150_00275 | Not Available | + | 90415 - 91806 | 49974.0 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW150_00280 | Not Available | + | 91825 - 92781 | 35966.2 |
| mfs transporter | DW150_00285 | Not Available | + | 93000 - 94475 | 54265.1 |
| dna helicase | DW150_00290 | Not Available | - | 94529 - 97855 | 128291.0 |
| hypothetical protein | DW150_00295 | Not Available | - | 97877 - 98617 | 27954.4 |
| duf4038 domain-containing protein | DW150_00300 | Not Available | - | 98714 - 100177 | 55585.9 |
| arabinosidase | DW150_00305 | Not Available | - | 100247 - 101251 | 38157.7 |
| response regulator | DW150_00310 | Not Available | - | 101366 - 105643 | 163420.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
