Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidase m23 | DW150_02745 | Not Available | + | 716611 - 717945 | 50873.3 |
| hypothetical protein | DW150_02750 | Not Available | + | 717930 - 719300 | 50703.2 |
| rna-binding protein | DW150_02760 | Not Available | + | 719644 - 720015 | 13160.2 |
| glutaminase | DW150_02765 | Not Available | - | 720346 - 721260 | 34114.9 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DW150_02770 | Not Available | - | 721275 - 723119 | 68233.8 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DW150_02775 | Not Available | - | 723196 - 723705 | 17759.1 |
| glycine cleavage system protein h | DW150_02780 | Not Available | - | 723831 - 724211 | 14165.5 |
| pap2 family protein | DW150_02785 | Not Available | - | 724248 - 724904 | 24868.9 |
| rna polymerase sigma-54 factor | DW150_02790 | Not Available | - | 724911 - 726380 | 56128.2 |
| xaa-pro aminopeptidase | DW150_02795 | Not Available | + | 726509 - 726739 | 8826.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
