Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susf/suse family outer membrane protein | DW150_02535 | Not Available | - | 661947 - 663104 | 41869.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_02540 | Not Available | - | 663141 - 664763 | 59953.0 |
| tonb-dependent receptor | DW150_02545 | Not Available | - | 664775 - 667855 | 113468.0 |
| hypothetical protein | DW150_02555 | Not Available | - | 668528 - 669634 | 40885.5 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_02560 | Not Available | - | 669652 - 671259 | 60451.7 |
| tonb-dependent receptor | DW150_02565 | Not Available | - | 671272 - 674277 | 110998.0 |
| glycoside hydrolase family 97 protein | DW150_02570 | Not Available | - | 674363 - 676579 | 84392.2 |
| alpha-amylase | DW150_02575 | Not Available | - | 676621 - 678471 | 70825.0 |
| hypothetical protein | DW150_02580 | Not Available | + | 678720 - 680315 | 62507.7 |
| hypothetical protein | DW150_02585 | Not Available | - | 680243 - 680437 | 7519.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
