Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 | DW150_00215 | Not Available | - | 63111 - 66479 | 126671.0 |
| carbohydrate esterase | DW150_00220 | Not Available | - | 66693 - 68213 | 55870.6 |
| hypothetical protein | DW150_00225 | Not Available | - | 68276 - 70822 | 94996.6 |
| duf5060 domain-containing protein | DW150_00230 | Not Available | - | 71016 - 72623 | 62066.7 |
| xylan 1,4-beta-xylosidase | DW150_00235 | Not Available | - | 72662 - 74161 | 56562.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00240 | Not Available | - | 74171 - 76207 | 74943.6 |
| tonb-dependent receptor | DW150_00245 | Not Available | - | 76238 - 79648 | 125525.0 |
| glycoside hydrolase | DW150_00250 | Not Available | - | 79896 - 81917 | 76012.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00255 | Not Available | - | 82325 - 84478 | 80255.1 |
| tonb-dependent receptor | DW150_00260 | Not Available | - | 84482 - 87712 | 118689.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
