Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-fucose isomerase | DW150_02480 | Not Available | - | 647247 - 649022 | 65614.0 |
| gntr family transcriptional regulator | DW150_02485 | Not Available | - | 649044 - 650024 | 38083.8 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DW150_02495 | Not Available | + | 650472 - 651986 | 55804.0 |
| duf3109 family protein | DW150_02500 | Not Available | + | 652089 - 652670 | 22097.6 |
| hypothetical protein | DW150_02505 | Not Available | + | 652738 - 653925 | 44515.9 |
| peptidase | DW150_02510 | Not Available | + | 654194 - 656050 | 67099.9 |
| hypothetical protein | DW150_02515 | Not Available | + | 656073 - 657053 | 35244.9 |
| arabinogalactan endo-1,4-beta-galactosidase | DW150_02520 | Not Available | - | 657140 - 658282 | 43041.0 |
| alpha-amylase | DW150_02525 | Not Available | - | 658296 - 660377 | 77911.9 |
| duf5115 domain-containing protein | DW150_02530 | Not Available | - | 660509 - 661924 | 51251.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
