Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_02430 | Not Available | + | 631975 - 632229 | 9955.59 |
| glycoside hydrolase | DW150_02435 | Not Available | - | 632320 - 634254 | 72971.8 |
| duf4981 domain-containing protein | DW150_02440 | Not Available | - | 634272 - 637448 | 121447.0 |
| lysine exporter lyso family protein | DW150_02445 | Not Available | - | 637462 - 638064 | 21649.9 |
| duf340 domain-containing protein | DW150_02450 | Not Available | - | 638061 - 638342 | 10217.2 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_02455 | Not Available | - | 638457 - 639974 | 57915.4 |
| tonb-dependent receptor | DW150_02460 | Not Available | - | 639995 - 643123 | 116504.0 |
| tetratricopeptide repeat protein | DW150_02465 | Not Available | - | 643347 - 644972 | 63092.9 |
| ribonuclease hii | DW150_02470 | Not Available | + | 645074 - 645679 | 22930.4 |
| l-fucose:h+ symporter permease | DW150_02475 | Not Available | - | 645822 - 647135 | 48494.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
