Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribosome assembly cofactor rimp | DW150_02380 | Not Available | + | 621156 - 621623 | 17902.3 |
| transcription termination/antitermination protein nusa | DW150_02385 | Not Available | + | 621626 - 622882 | 47697.0 |
| translation initiation factor if-2 | DW150_02390 | Not Available | + | 622924 - 625935 | 111115.0 |
| cvpa family protein | DW150_02395 | Not Available | + | 626074 - 626577 | 18088.2 |
| fe-s cluster assembly protein sufb | DW150_02400 | Not Available | + | 626585 - 628036 | 54039.0 |
| fe-s cluster assembly atpase sufc | DW150_02405 | Not Available | + | 628064 - 628816 | 27654.6 |
| fe-s cluster assembly protein sufd | DW150_02410 | Not Available | + | 628846 - 630189 | 50441.3 |
| cysteine desulfurase | DW150_02415 | Not Available | + | 630196 - 631410 | 45126.2 |
| hypothetical protein | DW150_02420 | Not Available | - | 631486 - 631692 | 7909.34 |
| hypothetical protein | DW150_02425 | Not Available | + | 631592 - 631918 | 12293.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
