Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DW150_02130 | Not Available | - | 555245 - 556783 | 59506.4 |
| tonb-dependent receptor | DW150_02135 | Not Available | + | 556835 - 558907 | 79126.3 |
| sufe family protein | DW150_02140 | Not Available | - | 558943 - 559371 | 16169.5 |
| glutamine cyclotransferase | DW150_02145 | Not Available | - | 559383 - 560387 | 37800.6 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DW150_02150 | Not Available | - | 560456 - 562213 | 64914.2 |
| phosphate butyryltransferase | DW150_02155 | Not Available | + | 562296 - 563204 | 33285.3 |
| butyrate kinase | DW150_02160 | Not Available | + | 563303 - 564367 | 38268.3 |
| helicase | DW150_02165 | Not Available | - | 564505 - 565755 | 48035.2 |
| hlyd family secretion protein | DW150_02170 | Not Available | - | 566305 - 566805 | 18478.7 |
| peptidase domain-containing abc transporter | DW150_02175 | Not Available | - | 566811 - 568997 | 83401.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
