Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | DW150_21560 | Not Available | + | 5123670 - 5124038 | 14010.9 |
| hypothetical protein | DW150_21570 | Not Available | + | 5128158 - 5130296 | 83674.4 |
| rna polymerase sigma-70 factor | DW150_21575 | Not Available | - | 5130620 - 5131207 | 22807.3 |
| protease | DW150_21580 | Not Available | + | 5131386 - 5134610 | 120703.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_21585 | Not Available | - | 5134677 - 5136458 | 68811.7 |
| tonb-dependent receptor | DW150_21590 | Not Available | - | 5136473 - 5139526 | 113942.0 |
| duf4982 domain-containing protein | DW150_21595 | Not Available | - | 5139560 - 5141998 | 93005.1 |
| response regulator | DW150_21600 | Not Available | - | 5142138 - 5146121 | 152781.0 |
| leucine--trna ligase | DW150_21610 | Not Available | + | 5146494 - 5149328 | 108370.0 |
| yitt family protein | DW150_21615 | Not Available | + | 5149410 - 5150306 | 33170.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
