Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| recombinase reca | DW150_21425 | Not Available | - | 5095229 - 5096272 | 37352.7 |
| thioredoxin-dependent thiol peroxidase | DW150_21430 | Not Available | - | 5096285 - 5096731 | 16910.4 |
| saccharopine dehydrogenase family protein | DW150_21435 | Not Available | - | 5096799 - 5097992 | 44966.5 |
| hypothetical protein | DW150_21440 | Not Available | - | 5098076 - 5099329 | 47830.2 |
| meta domain-containing protein | DW150_21445 | Not Available | + | 5099454 - 5100245 | 28683.9 |
| molecular chaperone dnak | DW150_21450 | Not Available | + | 5100574 - 5102487 | 68368.1 |
| duf499 domain-containing protein | DW150_21455 | Not Available | - | 5102883 - 5106173 | 122871.0 |
| duf1156 domain-containing protein | DW150_21465 | Not Available | - | 5108094 - 5108635 | 20324.4 |
| duf3883 domain-containing protein | DW150_21475 | Not Available | - | 5109311 - 5112730 | 131970.0 |
| xre family transcriptional regulator | DW150_21480 | Not Available | - | 5112723 - 5112932 | 8013.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
