Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DW150_21375 | Not Available | - | 5088133 - 5088591 | 17035.9 |
| thioredoxin | DW150_21380 | Not Available | - | 5088595 - 5088891 | 11304.9 |
| omph family outer membrane protein | DW150_21385 | Not Available | - | 5089010 - 5089624 | 23085.3 |
| hypothetical protein | DW150_21390 | Not Available | - | 5089647 - 5089874 | 8190.17 |
| aminoacyl-histidine dipeptidase | DW150_21395 | Not Available | + | 5090096 - 5091553 | 53106.6 |
| endonuclease | DW150_21400 | Not Available | + | 5091559 - 5092569 | 38303.9 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DW150_21405 | Not Available | - | 5092646 - 5093119 | 18369.6 |
| carboxylating nicotinate-nucleotide diphosphorylase | DW150_21410 | Not Available | + | 5093200 - 5094051 | 31272.2 |
| arac family transcriptional regulator | DW150_21415 | Not Available | - | 5094166 - 5094288 | 4713.68 |
| duf4923 family protein | DW150_21420 | Not Available | + | 5094445 - 5095041 | 21524.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
