Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | DW150_21325 | Not Available | + | 5079534 - 5080400 | 33272.9 |
| abc transporter permease | DW150_21330 | Not Available | + | 5080403 - 5081272 | 32622.6 |
| duf3098 domain-containing protein | DW150_21335 | Not Available | + | 5081285 - 5081530 | 9145.44 |
| undecaprenyl-diphosphate phosphatase | DW150_21340 | Not Available | + | 5081568 - 5082368 | 28554.1 |
| trna pseudouridine(55) synthase trub | DW150_21345 | Not Available | + | 5082373 - 5083080 | 26675.4 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DW150_21350 | Not Available | + | 5083092 - 5084147 | 40212.2 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DW150_21355 | Not Available | + | 5084166 - 5084612 | 16503.0 |
| nad(+) synthase | DW150_21360 | Not Available | - | 5084900 - 5086825 | 71124.6 |
| transcriptional repressor | DW150_21365 | Not Available | + | 5086990 - 5087400 | 15560.8 |
| nadh peroxidase | DW150_21370 | Not Available | + | 5087478 - 5088029 | 20566.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
