Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit yajc | DW150_21220 | Not Available | + | 5051653 - 5051967 | 11609.3 |
| ybbr-like domain-containing protein | DW150_21225 | Not Available | + | 5051981 - 5052994 | 39038.4 |
| dephospho-coa kinase | DW150_21230 | Not Available | + | 5052987 - 5053583 | 22342.1 |
| hypothetical protein | DW150_21235 | Not Available | + | 5053650 - 5054090 | 16021.2 |
| hypothetical protein | DW150_21240 | Not Available | - | 5054411 - 5054596 | 7017.38 |
| atp-dependent chaperone clpb | DW150_21245 | Not Available | - | 5055204 - 5057792 | 97135.7 |
| hypothetical protein | DW150_21250 | Not Available | + | 5058067 - 5058648 | 21484.8 |
| lysr family transcriptional regulator | DW150_21255 | Not Available | + | 5058661 - 5059557 | 34386.8 |
| putative sulfate exporter family transporter | DW150_21260 | Not Available | + | 5059646 - 5060632 | 35115.2 |
| susc/raga family tonb-linked outer membrane protein | DW150_21270 | Not Available | + | 5061788 - 5065315 | 131539.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
