Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| citrate/2-methylcitrate synthase | DW150_21010 | Not Available | - | 5008805 - 5010148 | 51062.6 |
| nadp-dependent isocitrate dehydrogenase | DW150_21015 | Not Available | - | 5010161 - 5011306 | 41548.9 |
| aconitate hydratase | DW150_21020 | Not Available | - | 5011310 - 5013553 | 81224.8 |
| helicase | DW150_21025 | Not Available | + | 5013725 - 5015617 | 72919.7 |
| dihydrolipoamide acyltransferase | DW150_21030 | Not Available | - | 5015800 - 5016174 | 13034.7 |
| hypothetical protein | DW150_21035 | Not Available | - | 5016407 - 5017273 | 33126.5 |
| dna topoisomerase iii | DW150_21040 | Not Available | + | 5017548 - 5019689 | 79893.0 |
| rrna cytosine-c5-methyltransferase | DW150_21045 | Not Available | - | 5019826 - 5021253 | 53395.1 |
| hypothetical protein | DW150_21050 | Not Available | + | 5021385 - 5022083 | 25627.1 |
| rna polymerase sigma factor | DW150_21055 | Not Available | + | 5022086 - 5022634 | 21190.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
