Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW150_20770 | Not Available | - | 4956485 - 4957699 | 46224.5 |
| site-specific integrase | DW150_20775 | Not Available | - | 4957720 - 4958949 | 47104.5 |
| hypothetical protein | DW150_20785 | Not Available | - | 4959817 - 4960659 | 33392.9 |
| hypothetical protein | DW150_20790 | Not Available | - | 4960685 - 4960762 | 2843.5 |
| had family hydrolase | DW150_20795 | Not Available | - | 4960807 - 4961454 | 24008.2 |
| sugar o-acetyltransferase | DW150_20800 | Not Available | - | 4961447 - 4962055 | 22194.8 |
| arac family transcriptional regulator | DW150_20805 | Not Available | + | 4962183 - 4963022 | 33107.0 |
| magnesium and cobalt transport protein cora | DW150_20810 | Not Available | + | 4963479 - 4964397 | 35129.1 |
| duf4857 domain-containing protein | DW150_20815 | Not Available | - | 4964804 - 4965832 | 39469.4 |
| hypothetical protein | DW150_20820 | Not Available | - | 4965866 - 4966537 | 25613.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
