Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator | DW150_20715 | Not Available | + | 4947873 - 4950203 | 88739.0 |
| hypothetical protein | DW150_20725 | Not Available | - | 4951606 - 4951878 | 10326.3 |
| duf3408 domain-containing protein | DW150_20730 | Not Available | + | 4952243 - 4952740 | 18718.2 |
| hypothetical protein | DW150_20735 | Not Available | - | 4952832 - 4953245 | 15606.9 |
| sigma-70 family rna polymerase sigma factor | DW150_20740 | Not Available | - | 4953291 - 4953848 | 22087.2 |
| hypothetical protein | DW150_20745 | Not Available | + | 4953883 - 4954119 | 8899.15 |
| dna-binding protein | DW150_20750 | Not Available | + | 4954270 - 4954599 | 12666.3 |
| dna-binding protein | DW150_20755 | Not Available | + | 4954607 - 4954927 | 12278.7 |
| winged helix-turn-helix transcriptional regulator | DW150_20760 | Not Available | + | 4955121 - 4956143 | 38636.5 |
| hypothetical protein | DW150_20765 | Not Available | + | 4956258 - 4956500 | 9497.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
