Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | DW150_20545 | Not Available | + | 4913455 - 4914393 | 35884.8 |
| alpha-2-macroglobulin | DW150_20550 | Not Available | + | 4914506 - 4920184 | 213580.0 |
| duf1573 domain-containing protein | DW150_20560 | Not Available | + | 4920807 - 4921883 | 39174.1 |
| methylmalonyl co-a mutase-associated gtpase meab | DW150_20565 | Not Available | + | 4921886 - 4922983 | 40361.6 |
| 6-phosphofructokinase | DW150_20570 | Not Available | - | 4923072 - 4924052 | 35428.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DW150_20575 | Not Available | - | 4924134 - 4925000 | 32583.1 |
| (d)cmp kinase | DW150_20580 | Not Available | - | 4924993 - 4925682 | 25655.7 |
| oxidoreductase | DW150_20585 | Not Available | - | 4925761 - 4925858 | 3205.87 |
| arac family transcriptional regulator | DW150_20590 | Not Available | + | 4926045 - 4926980 | 35502.2 |
| arac family transcriptional regulator | DW150_20595 | Not Available | - | 4927020 - 4927922 | 34654.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
