Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| upf0104 family protein | DW150_20490 | Not Available | + | 4899247 - 4900251 | 37225.6 |
| aminoacyl-histidine dipeptidase | DW150_20495 | Not Available | + | 4900248 - 4901708 | 53200.6 |
| nucleoside deaminase | DW150_20500 | Not Available | - | 4901770 - 4902237 | 17009.3 |
| rna polymerase sigma-70 factor | DW150_20505 | Not Available | + | 4902456 - 4903022 | 22646.5 |
| duf4974 domain-containing protein | DW150_20510 | Not Available | + | 4903112 - 4904074 | 37472.3 |
| susc/raga family tonb-linked outer membrane protein | DW150_20515 | Not Available | + | 4904268 - 4907570 | 122138.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_20520 | Not Available | + | 4907589 - 4909052 | 55285.9 |
| beta-n-acetylhexosaminidase | DW150_20525 | Not Available | + | 4909226 - 4911367 | 81041.1 |
| transcriptional regulator | DW150_20535 | Not Available | + | 4912908 - 4913123 | 7907.73 |
| phosphatidylinositol kinase | DW150_20540 | Not Available | + | 4913120 - 4913455 | 12520.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
