Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family efflux transporter periplasmic adaptor subunit | DW150_20390 | Not Available | + | 4875991 - 4876887 | 33092.7 |
| abc transporter atp-binding protein | DW150_20395 | Not Available | + | 4876896 - 4878350 | 54605.2 |
| abc transporter permease | DW150_20400 | Not Available | + | 4878374 - 4879480 | 41400.4 |
| abc transporter permease | DW150_20405 | Not Available | + | 4879493 - 4880599 | 41555.2 |
| transaldolase | DW150_20410 | Not Available | + | 4880696 - 4881352 | 23527.5 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW150_20415 | Not Available | - | 4881729 - 4883999 | 86234.8 |
| lysm peptidoglycan-binding domain-containing protein | DW150_20420 | Not Available | - | 4884101 - 4885363 | 47776.3 |
| hypothetical protein | DW150_20425 | Not Available | - | 4885368 - 4886075 | 26895.4 |
| parb/repb/spo0j family partition protein | DW150_20430 | Not Available | - | 4886145 - 4887041 | 33345.2 |
| para family protein | DW150_20435 | Not Available | - | 4887045 - 4887812 | 27989.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
