Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | + | 4848663 - 4848739 | Not Available |
| Trna-arg | Not Available | Not Available | + | 4848768 - 4848844 | Not Available |
| Trna-arg | Not Available | Not Available | + | 4848873 - 4848949 | Not Available |
| Trna-arg | Not Available | Not Available | + | 4848978 - 4849054 | Not Available |
| 4-hydroxy-tetrahydrodipicolinate synthase | DW150_20255 | Not Available | - | 4849439 - 4850332 | 32819.2 |
| nad-dependent dna ligase liga | DW150_20260 | Not Available | - | 4850434 - 4852431 | 75132.7 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DW150_20265 | Not Available | + | 4852530 - 4853204 | 25423.7 |
| dihydroorotate dehydrogenase | DW150_20270 | Not Available | - | 4853570 - 4854481 | 32333.4 |
| dihydroorotate dehydrogenase electron transfer subunit | DW150_20275 | Not Available | - | 4854469 - 4855248 | 28483.2 |
| xre family transcriptional regulator | DW150_20280 | Not Available | - | 4855342 - 4855794 | 17309.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
