Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW150_20185 | Not Available | - | 4829418 - 4832621 | 118624.0 |
| lactaldehyde reductase | DW150_20190 | Not Available | - | 4832824 - 4833978 | 40917.7 |
| helicase | DW150_20195 | Not Available | - | 4834212 - 4835468 | 48877.9 |
| hypothetical protein | DW150_20200 | Not Available | + | 4835559 - 4835792 | 9028.75 |
| pp_03973 | DW150_20205 | Not Available | - | 4835988 - 4836905 | Not Available |
| hypothetical protein | DW150_20210 | Not Available | - | 4837271 - 4838488 | 45953.7 |
| dna gyrase subunit a | DW150_20215 | Not Available | - | 4838519 - 4841077 | 96247.1 |
| atp-dependent clp protease atp-binding subunit | DW150_20220 | Not Available | + | 4841441 - 4843957 | 93976.0 |
| molecular chaperone htpg | DW150_20225 | Not Available | + | 4844092 - 4846137 | 78219.2 |
| patatin | DW150_20230 | Not Available | + | 4846267 - 4848573 | 87659.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
