Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW150_20135 | Not Available | - | 4817260 - 4820481 | 118865.0 |
| mannonate dehydratase | DW150_20140 | Not Available | - | 4820696 - 4821871 | 44554.6 |
| sdr family nad(p)-dependent oxidoreductase | DW150_20145 | Not Available | - | 4821911 - 4822723 | 28669.7 |
| hypothetical protein | DW150_20150 | Not Available | - | 4822728 - 4823384 | 25602.4 |
| signal peptidase i | DW150_20155 | Not Available | - | 4823384 - 4824247 | 32796.6 |
| s26 family signal peptidase | DW150_20160 | Not Available | - | 4824285 - 4825709 | 55206.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DW150_20165 | Not Available | - | 4825713 - 4826468 | 27422.6 |
| duf2851 family protein | DW150_20170 | Not Available | + | 4826552 - 4827817 | 48672.4 |
| hypothetical protein | DW150_20175 | Not Available | - | 4827881 - 4828537 | 24648.2 |
| glycerophosphodiester phosphodiesterase | DW150_20180 | Not Available | - | 4828614 - 4829390 | 29034.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
