Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase | DW150_20085 | Not Available | + | 4799976 - 4802498 | 97444.5 |
| glycoside hydrolase | DW150_20090 | Not Available | - | 4802509 - 4803546 | 38688.0 |
| carbohydrate kinase | DW150_20095 | Not Available | - | 4803586 - 4804506 | 34649.4 |
| sis domain-containing protein | DW150_20100 | Not Available | - | 4804614 - 4805216 | 21797.5 |
| tigr00730 family rossman fold protein | DW150_20105 | Not Available | - | 4805234 - 4805770 | 19870.1 |
| insulinase family protein | DW150_20110 | Not Available | + | 4805872 - 4807092 | 46475.2 |
| glycoside hydrolase family 95 protein | DW150_20115 | Not Available | + | 4807191 - 4809647 | 92057.1 |
| hybrid sensor histidine kinase/response regulator | DW150_20120 | Not Available | + | 4809852 - 4813745 | 148318.0 |
| duf4976 domain-containing protein | DW150_20125 | Not Available | - | 4813796 - 4815370 | 61272.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_20130 | Not Available | - | 4815393 - 4817255 | 70100.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
