Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_19980 | Not Available | - | 4775013 - 4776047 | 40113.8 |
| sdr family nad(p)-dependent oxidoreductase | DW150_19985 | Not Available | - | 4776059 - 4776781 | 26570.1 |
| long-chain fatty acid--coa ligase | DW150_19990 | Not Available | - | 4776778 - 4777944 | 43794.6 |
| acyl carrier protein | DW150_19995 | Not Available | - | 4777972 - 4778196 | 8529.04 |
| nucleoside-diphosphate sugar epimerase | DW150_20000 | Not Available | - | 4778215 - 4779423 | 45740.0 |
| hypothetical protein | DW150_20005 | Not Available | - | 4779660 - 4780094 | 16506.8 |
| dna-binding protein | DW150_20010 | Not Available | + | 4780282 - 4780782 | 17891.4 |
| hypothetical protein | DW150_20015 | Not Available | + | 4780779 - 4781171 | 14728.1 |
| n-acetylmuramoyl-l-alanine amidase | DW150_20020 | Not Available | + | 4781310 - 4781729 | 15419.4 |
| transcriptional regulator | DW150_20025 | Not Available | - | 4781795 - 4782625 | 31630.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
