Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| inositol monophosphatase | DW150_19920 | Not Available | - | 4764769 - 4765461 | 26453.0 |
| 4-hydroxy-2-ketovalerate aldolase | DW150_19925 | Not Available | - | 4765454 - 4767031 | 60315.2 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DW150_19930 | Not Available | - | 4767028 - 4767780 | 28756.8 |
| nucleotidyltransferase | DW150_19935 | Not Available | - | 4767800 - 4768840 | 39759.1 |
| acylneuraminate cytidylyltransferase family protein | DW150_19940 | Not Available | - | 4768851 - 4769540 | 25950.2 |
| udp-n-acetylglucosamine 2-epimerase (hydrolyzing) | DW150_19945 | Not Available | - | 4769545 - 4770699 | 43044.8 |
| n-acetylneuraminate synthase | DW150_19950 | Not Available | - | 4770696 - 4771703 | 37323.8 |
| methionyl-trna formyltransferase | DW150_19955 | Not Available | - | 4771703 - 4772605 | 34634.9 |
| legc family aminotransferase | DW150_19965 | Not Available | - | 4772840 - 4773985 | 43092.3 |
| polysaccharide deacetylase | DW150_19970 | Not Available | - | 4774007 - 4774807 | 30539.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
