Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_19865 | Not Available | - | 4753625 - 4753960 | 13387.5 |
| glycosyltransferase | DW150_19875 | Not Available | - | 4754448 - 4755395 | 37756.4 |
| degt/dnrj/eryc1/strs aminotransferase family protein | DW150_19880 | Not Available | - | 4755392 - 4756513 | 41971.6 |
| glucose-1-phosphate cytidylyltransferase | DW150_19885 | Not Available | - | 4756516 - 4757316 | 30880.2 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DW150_19890 | Not Available | - | 4757313 - 4757789 | 17748.7 |
| cdp-glucose 4,6-dehydratase | DW150_19895 | Not Available | - | 4757799 - 4758899 | 41565.7 |
| pyridoxal-5'-phosphate-dependent protein | DW150_19900 | Not Available | - | 4758889 - 4760160 | 48052.1 |
| lipopolysaccharide biosynthesis protein | DW150_19905 | Not Available | - | 4760215 - 4761744 | 58496.3 |
| hypothetical protein | DW150_19910 | Not Available | - | 4761750 - 4763393 | 63753.9 |
| hypothetical protein | DW150_19915 | Not Available | - | 4763394 - 4764551 | 44592.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
