Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase | DW150_19755 | Not Available | - | 4733766 - 4734266 | 18951.8 |
| had family hydrolase | DW150_19760 | Not Available | + | 4734329 - 4734982 | 24312.2 |
| doxx family protein | DW150_19770 | Not Available | + | 4735219 - 4735659 | 16212.7 |
| duf4435 domain-containing protein | DW150_19775 | Not Available | - | 4735665 - 4736660 | 39151.5 |
| atp-binding cassette domain-containing protein | DW150_19780 | Not Available | - | 4736682 - 4737503 | 31109.5 |
| dmt family transporter | DW150_19785 | Not Available | + | 4737586 - 4738512 | 33083.5 |
| sdr family nad(p)-dependent oxidoreductase | DW150_19790 | Not Available | - | 4738619 - 4739479 | 31828.0 |
| nadh:flavin oxidoreductase | DW150_19795 | Not Available | - | 4739476 - 4740699 | 45432.3 |
| duf1295 domain-containing protein | DW150_19800 | Not Available | - | 4740762 - 4741526 | 29510.6 |
| hypothetical protein | DW150_19805 | Not Available | + | 4741690 - 4741956 | 10303.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
