Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acyltransferase | DW150_01930 | Not Available | - | 514464 - 515351 | 33266.5 |
| agmatine deiminase family protein | DW150_01935 | Not Available | - | 515363 - 516388 | 39329.7 |
| translocation/assembly module tamb | DW150_01940 | Not Available | - | 516443 - 520903 | 166368.0 |
| hded family acid-resistance protein | DW150_01945 | Not Available | - | 520968 - 521531 | 21002.6 |
| sodium:proton antiporter | DW150_01950 | Not Available | + | 521725 - 523176 | 51483.2 |
| aminopeptidase | DW150_01955 | Not Available | + | 523288 - 524664 | 51926.3 |
| hypothetical protein | DW150_01960 | Not Available | + | 525016 - 525285 | 10540.5 |
| site-specific integrase | DW150_01965 | Not Available | - | 525407 - 526525 | 43181.9 |
| holliday junction branch migration dna helicase ruvb | DW150_01970 | Not Available | + | 526652 - 527680 | 38035.6 |
| lipopolysaccharide biosynthesis protein | DW150_01975 | Not Available | + | 527684 - 529129 | 54370.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
