Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DW150_19705 | Not Available | + | 4718926 - 4720590 | 61637.0 |
| rna polymerase subunit sigma-70 | DW150_19710 | Not Available | + | 4720691 - 4721275 | 23242.7 |
| duf4974 domain-containing protein | DW150_19715 | Not Available | + | 4721342 - 4722502 | 44035.4 |
| susc/raga family tonb-linked outer membrane protein | DW150_19720 | Not Available | + | 4722558 - 4725875 | 122524.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_19725 | Not Available | + | 4725896 - 4727386 | 55759.7 |
| thioredoxin | DW150_19730 | Not Available | + | 4727405 - 4728571 | 44504.1 |
| tlpa family protein disulfide reductase | DW150_19735 | Not Available | + | 4728573 - 4729922 | 50429.2 |
| sodium ion-translocating decarboxylase subunit beta | DW150_19740 | Not Available | - | 4730118 - 4731353 | 44261.9 |
| oxaloacetate decarboxylase | DW150_19745 | Not Available | - | 4731353 - 4733215 | 69002.7 |
| oxaloacetate decarboxylase | DW150_19750 | Not Available | - | 4733246 - 4733497 | 8695.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
