Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW150_19595 | Not Available | - | 4692203 - 4695289 | 114152.0 |
| carboxypeptidase-like regulatory domain-containing protein | DW150_19605 | Not Available | - | 4696754 - 4698310 | 60038.7 |
| anti-sigma factor | DW150_19610 | Not Available | - | 4698320 - 4699174 | 32367.9 |
| rna polymerase sigma-70 factor | DW150_19615 | Not Available | - | 4699171 - 4699722 | 22047.7 |
| carboxypeptidase-like regulatory domain-containing protein | DW150_19620 | Not Available | - | 4699774 - 4701051 | 49309.2 |
| arc family dna-binding protein | DW150_19625 | Not Available | - | 4701212 - 4701406 | 7498.2 |
| spfh domain-containing protein | DW150_19630 | Not Available | - | 4701415 - 4702365 | 35397.3 |
| helicase | DW150_19640 | Not Available | + | 4702938 - 4704938 | 76861.1 |
| threonylcarbamoyl-amp synthase | DW150_19645 | Not Available | + | 4704945 - 4705559 | 23103.3 |
| mechanosensitive ion channel family protein | DW150_19650 | Not Available | + | 4705608 - 4706441 | 30695.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
