Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| two-component sensor histidine kinase | DW150_19545 | Not Available | + | 4678437 - 4680449 | 78052.5 |
| serine acetyltransferase | DW150_19550 | Not Available | - | 4680546 - 4681454 | 32812.2 |
| ribonuclease r | DW150_19555 | Not Available | - | 4681755 - 4683902 | 81969.4 |
| cation transporter | DW150_19560 | Not Available | + | 4684033 - 4684935 | 32945.4 |
| nad(p)-dependent oxidoreductase | DW150_19565 | Not Available | + | 4684946 - 4685992 | 40234.5 |
| phosphatase pap2 family protein | DW150_19570 | Not Available | + | 4685983 - 4686960 | 37816.7 |
| duf2807 domain-containing protein | DW150_19575 | Not Available | + | 4687137 - 4687988 | 29120.2 |
| trna dihydrouridine synthase dusb | DW150_19580 | Not Available | - | 4688084 - 4689073 | 37093.4 |
| u32 family peptidase | DW150_19585 | Not Available | + | 4689223 - 4690485 | 47014.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_19590 | Not Available | - | 4690637 - 4692187 | 58718.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
