Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_19495 | Not Available | + | 4665586 - 4668594 | 110543.0 |
| sam-dependent methyltransferase | DW150_19500 | Not Available | - | 4668947 - 4669630 | 26039.9 |
| deda family protein | DW150_19505 | Not Available | - | 4669635 - 4670102 | 16985.3 |
| hypothetical protein | DW150_19510 | Not Available | - | 4670078 - 4671013 | 35940.9 |
| phosphoribosylamine--glycine ligase | DW150_19515 | Not Available | - | 4671032 - 4672300 | 45595.0 |
| s9 family peptidase | DW150_19520 | Not Available | - | 4672316 - 4674529 | 83571.2 |
| rna methyltransferase | DW150_19525 | Not Available | - | 4674536 - 4675984 | 56252.4 |
| type ii toxin-antitoxin system hicb family antitoxin | DW150_19530 | Not Available | - | 4676494 - 4676685 | 7310.17 |
| hydrogen peroxide-inducible genes activator | DW150_19535 | Not Available | - | 4676778 - 4677704 | 35321.3 |
| dna starvation/stationary phase protection protein | DW150_19540 | Not Available | + | 4677831 - 4678307 | 17893.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
