Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dihydrolipoyl dehydrogenase | DW150_19445 | Not Available | + | 4652199 - 4653539 | 47577.6 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DW150_19450 | Not Available | + | 4653539 - 4654939 | 52410.8 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW150_19455 | Not Available | + | 4655111 - 4655953 | 31706.8 |
| gluconate 5-dehydrogenase | DW150_19460 | Not Available | + | 4655990 - 4656793 | 28590.5 |
| duf4861 domain-containing protein | DW150_19465 | Not Available | + | 4656890 - 4658062 | 42920.6 |
| polysaccharide deacetylase family protein | DW150_19470 | Not Available | - | 4658126 - 4658737 | 24627.9 |
| duf2723 domain-containing protein | DW150_19475 | Not Available | - | 4658808 - 4662212 | 129153.0 |
| metal abc transporter atp-binding protein | DW150_19480 | Not Available | - | 4662673 - 4663440 | 28695.6 |
| zinc abc transporter substrate-binding protein | DW150_19485 | Not Available | - | 4663450 - 4664355 | 34017.5 |
| arac family transcriptional regulator | DW150_19490 | Not Available | + | 4665031 - 4665528 | 19137.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
