Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW150_19345 | Not Available | - | 4618935 - 4621979 | 114150.0 |
| glycoside hydrolase family 127 protein | DW150_19350 | Not Available | - | 4622014 - 4624449 | 91046.9 |
| invertase | DW150_19355 | Not Available | + | 4624828 - 4625439 | 23036.3 |
| hypothetical protein | DW150_19360 | Not Available | + | 4625896 - 4626090 | 7220.57 |
| hypothetical protein | DW150_19365 | Not Available | - | 4626296 - 4626685 | 14968.1 |
| hypothetical protein | DW150_19370 | Not Available | - | 4626660 - 4626959 | 11716.9 |
| tonb-dependent receptor | DW150_19375 | Not Available | + | 4627148 - 4630177 | 113022.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_19380 | Not Available | + | 4630198 - 4631877 | 63688.1 |
| duf4859 domain-containing protein | DW150_19385 | Not Available | + | 4631909 - 4632919 | 36369.3 |
| glycoside hydrolase family 97 protein | DW150_19390 | Not Available | + | 4633230 - 4635953 | 103187.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
