Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | DW150_19295 | Not Available | + | 4601067 - 4603139 | 81268.0 |
| radical sam protein | DW150_19300 | Not Available | + | 4603185 - 4603961 | 29376.4 |
| dna mismatch repair protein muts | DW150_19305 | Not Available | + | 4604407 - 4605924 | 58102.3 |
| hypothetical protein | DW150_19310 | Not Available | + | 4606047 - 4606232 | 7162.59 |
| stas domain-containing protein | DW150_19315 | Not Available | - | 4606763 - 4608445 | 60541.7 |
| duf4884 domain-containing protein | DW150_19320 | Not Available | - | 4608544 - 4608813 | 10107.0 |
| rubrerythrin family protein | DW150_19325 | Not Available | + | 4608994 - 4609572 | 21626.4 |
| hybrid sensor histidine kinase/response regulator | DW150_19330 | Not Available | - | 4609666 - 4613652 | 150451.0 |
| hypothetical protein | DW150_19335 | Not Available | - | 4613793 - 4617149 | 126659.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_19340 | Not Available | - | 4617289 - 4618908 | 61259.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
