Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_19245 | Not Available | + | 4583732 - 4584196 | 17213.5 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW150_19250 | Not Available | - | 4584509 - 4586479 | 73981.3 |
| susc/raga family tonb-linked outer membrane protein | DW150_19255 | Not Available | - | 4586501 - 4589629 | 113909.0 |
| aaa family atpase | DW150_19260 | Not Available | - | 4589910 - 4591103 | 45782.3 |
| alpha-l-fucosidase | DW150_19265 | Not Available | - | 4591355 - 4592758 | 54877.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW150_19270 | Not Available | - | 4592856 - 4594766 | 72455.8 |
| susc/raga family tonb-linked outer membrane protein | DW150_19275 | Not Available | - | 4594799 - 4598032 | 118505.0 |
| quinolinate synthase nada | DW150_19280 | Not Available | - | 4598257 - 4599249 | 36638.1 |
| trmh family rna methyltransferase | DW150_19285 | Not Available | + | 4599831 - 4600367 | 19963.2 |
| duf4294 domain-containing protein | DW150_19290 | Not Available | - | 4600398 - 4600970 | 22062.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
