Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosidase | DW150_19195 | Not Available | + | 4571967 - 4573145 | 44147.4 |
| alkaline phosphatase | DW150_19200 | Not Available | + | 4573304 - 4574206 | 33069.7 |
| sodium:solute symporter | DW150_19205 | Not Available | + | 4574224 - 4576107 | 70921.8 |
| hypothetical protein | DW150_19210 | Not Available | + | 4576685 - 4576894 | 8139.78 |
| aldo/keto reductase | DW150_19215 | Not Available | + | 4577024 - 4578406 | 52529.6 |
| 4fe-4s dicluster domain-containing protein | DW150_19220 | Not Available | + | 4578442 - 4579968 | 55745.6 |
| duf1893 domain-containing protein | DW150_19225 | Not Available | + | 4579981 - 4580397 | 15795.4 |
| pyridoxamine 5'-phosphate oxidase family protein | DW150_19230 | Not Available | - | 4580664 - 4581149 | 18642.5 |
| cupin domain-containing protein | DW150_19235 | Not Available | + | 4581396 - 4581950 | 20504.8 |
| acetyl-coa synthetase | DW150_19240 | Not Available | + | 4582035 - 4583687 | 62384.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
