Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ecf transporter s component | DW150_19090 | Not Available | - | 4545977 - 4546486 | 18409.3 |
| hypothetical protein | DW150_19095 | Not Available | + | 4546620 - 4547102 | 17705.1 |
| duf4010 domain-containing protein | DW150_19100 | Not Available | + | 4547181 - 4548470 | 48231.9 |
| duf4251 domain-containing protein | DW150_19110 | Not Available | - | 4550177 - 4550674 | 18480.1 |
| rhamnulose-1-phosphate aldolase | DW150_19115 | Not Available | - | 4550884 - 4551693 | 30253.7 |
| l-rhamnose/proton symporter rhat | DW150_19120 | Not Available | - | 4551780 - 4552799 | 36101.1 |
| l-rhamnose isomerase | DW150_19125 | Not Available | - | 4552893 - 4554149 | 47536.4 |
| rhamnulokinase | DW150_19130 | Not Available | - | 4554189 - 4555667 | 55035.9 |
| arginine repressor | DW150_19135 | Not Available | + | 4555974 - 4556450 | 17529.3 |
| n-acetyltransferase | DW150_19140 | Not Available | + | 4556473 - 4557030 | 20661.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
