Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW150_19040 | Not Available | - | 4532870 - 4533634 | 29875.6 |
| histidine kinase | DW150_19045 | Not Available | - | 4533762 - 4535813 | 79865.5 |
| aldose 1-epimerase family protein | DW150_19050 | Not Available | + | 4535981 - 4536856 | 34017.8 |
| eama family transporter | DW150_19055 | Not Available | - | 4536905 - 4537825 | 34775.9 |
| phospho-sugar mutase | DW150_19060 | Not Available | - | 4538008 - 4539753 | 64726.5 |
| dipeptidase | DW150_19065 | Not Available | - | 4540065 - 4541705 | 61091.6 |
| m23 family peptidase | DW150_19070 | Not Available | - | 4541748 - 4543418 | 62691.8 |
| alanine dehydrogenase | DW150_19075 | Not Available | + | 4543612 - 4544703 | 38997.8 |
| twin-arginine translocase subunit tatc | DW150_19080 | Not Available | - | 4544790 - 4545620 | 32358.6 |
| twin-arginine translocase tata/tate family subunit | DW150_19085 | Not Available | - | 4545627 - 4545830 | 7275.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
