Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_18925 | Not Available | - | 4501370 - 4501576 | 7890.73 |
| hypothetical protein | DW150_18930 | Not Available | + | 4501763 - 4503664 | 74915.2 |
| rlua family pseudouridine synthase | DW150_18935 | Not Available | + | 4503712 - 4505334 | 62362.1 |
| mate family efflux transporter | DW150_18940 | Not Available | - | 4505402 - 4506763 | 49502.5 |
| trkh family potassium uptake protein | DW150_18945 | Not Available | - | 4506891 - 4508396 | 56219.4 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_18950 | Not Available | + | 4508891 - 4510090 | 44293.4 |
| multidrug efflux rnd transporter permease subunit | DW150_18955 | Not Available | + | 4510157 - 4513258 | 113181.0 |
| tolc family protein | DW150_18960 | Not Available | + | 4513280 - 4514653 | 51781.2 |
| hypothetical protein | DW150_18965 | Not Available | - | 4514692 - 4515903 | 45740.3 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | DW150_18975 | Not Available | + | 4517356 - 4520901 | 129302.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
