Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| kinase | DW150_18875 | Not Available | - | 4494222 - 4495256 | 40132.4 |
| type ii toxin-antitoxin system hipa family toxin | DW150_18880 | Not Available | - | 4495341 - 4496603 | 48288.0 |
| xre family transcriptional regulator | DW150_18885 | Not Available | - | 4496607 - 4496927 | 11920.9 |
| hypothetical protein | DW150_18890 | Not Available | + | 4497590 - 4497844 | 9907.41 |
| site-specific integrase | DW150_18895 | Not Available | + | 4497817 - 4498854 | 40866.9 |
| maoc family dehydratase | DW150_18900 | Not Available | - | 4499139 - 4499603 | 17729.6 |
| nitrous oxide-stimulated promoter family protein | DW150_18905 | Not Available | + | 4499701 - 4499994 | 11975.9 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DW150_18910 | Not Available | + | 4500000 - 4500353 | 13118.7 |
| hypothetical protein | DW150_18915 | Not Available | - | 4500303 - 4500776 | 18285.6 |
| sgnh/gdsl hydrolase family protein | DW150_18920 | Not Available | - | 4500843 - 4501367 | 20131.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
