Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gaf domain-containing protein | DW150_18710 | Not Available | + | 4451258 - 4451743 | 18148.8 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DW150_18715 | Not Available | + | 4451754 - 4453250 | 55157.1 |
| dna-binding protein | DW150_18720 | Not Available | + | 4453512 - 4454390 | 35212.6 |
| site-specific integrase | DW150_18725 | Not Available | + | 4454508 - 4455623 | 43762.0 |
| hypothetical protein | DW150_18730 | Not Available | + | 4455792 - 4456634 | 31886.1 |
| dna-binding protein | DW150_18735 | Not Available | + | 4456736 - 4457110 | 14540.4 |
| metalloproteinase | DW150_18745 | Not Available | + | 4458620 - 4459039 | 15543.8 |
| relaxase | DW150_18750 | Not Available | + | 4459036 - 4460244 | 46397.1 |
| duf2075 domain-containing protein | DW150_18755 | Not Available | + | 4460530 - 4462668 | 80417.7 |
| hnh endonuclease | DW150_18760 | Not Available | + | 4462720 - 4463811 | 41634.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
