Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein nlpe | DW150_18610 | Not Available | + | 4431566 - 4431994 | 15888.7 |
| blai/meci/copy family transcriptional regulator | DW150_18615 | Not Available | + | 4432181 - 4432546 | 14087.0 |
| tonb family protein | DW150_18620 | Not Available | + | 4432569 - 4434419 | 69457.5 |
| mrp family atp-binding protein | DW150_18625 | Not Available | - | 4434487 - 4435587 | 39559.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DW150_18630 | Not Available | - | 4435598 - 4436356 | 29773.6 |
| duf975 family protein | DW150_18635 | Not Available | - | 4436479 - 4437105 | 23278.0 |
| branched-chain amino acid aminotransferase | DW150_18640 | Not Available | - | 4437123 - 4438142 | 37876.2 |
| exodeoxyribonuclease vii small subunit | DW150_18645 | Not Available | - | 4438323 - 4438526 | 7823.46 |
| exodeoxyribonuclease vii large subunit | DW150_18650 | Not Available | - | 4438535 - 4439842 | 49561.8 |
| serine protease | DW150_18655 | Not Available | - | 4439842 - 4441215 | 49946.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
