Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acrb/acrd/acrf family protein | DW150_18510 | Not Available | - | 4402344 - 4405562 | 116913.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_18515 | Not Available | - | 4405616 - 4406827 | 43743.5 |
| nadp-dependent malic enzyme | DW150_18520 | Not Available | + | 4407278 - 4409563 | 84254.2 |
| hypothetical protein | DW150_18525 | Not Available | + | 4409693 - 4409875 | 6699.77 |
| nadp-specific glutamate dehydrogenase | DW150_18530 | Not Available | + | 4410031 - 4411365 | 48942.7 |
| hypothetical protein | DW150_18535 | Not Available | + | 4411521 - 4412669 | 42369.6 |
| port family protein | DW150_18540 | Not Available | + | 4412678 - 4413454 | 29104.0 |
| duf4925 domain-containing protein | DW150_18545 | Not Available | - | 4414310 - 4415515 | 43462.5 |
| phosphoenolpyruvate synthase | DW150_18550 | Not Available | - | 4415625 - 4418582 | 112937.0 |
| nadp-specific glutamate dehydrogenase | DW150_18555 | Not Available | + | 4418817 - 4420154 | 48494.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
