Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspartate-semialdehyde dehydrogenase | DW150_18405 | Not Available | + | 4378007 - 4379017 | 37267.8 |
| peptidylprolyl isomerase | DW150_18410 | Not Available | - | 4379497 - 4380138 | 23259.6 |
| glycine--trna ligase | DW150_18415 | Not Available | - | 4380152 - 4381693 | 59408.9 |
| dna gyrase/topoisomerase iv subunit a | DW150_18420 | Not Available | + | 4381845 - 4384538 | 102637.0 |
| duf3316 domain-containing protein | DW150_18425 | Not Available | + | 4384542 - 4385387 | 31956.1 |
| peptidase s41 | DW150_18430 | Not Available | + | 4385396 - 4386424 | 39226.1 |
| Trna-leu | Not Available | Not Available | + | 4386493 - 4386577 | Not Available |
| hypothetical protein | DW150_18445 | Not Available | + | 4387896 - 4388324 | 15834.6 |
| hypothetical protein | DW150_18450 | Not Available | + | 4388412 - 4388708 | 11622.0 |
| acyltransferase | DW150_18455 | Not Available | + | 4388742 - 4389479 | 27127.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
