Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW150_18355 | Not Available | + | 4365998 - 4367239 | 45551.9 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_18360 | Not Available | + | 4367313 - 4368407 | 40051.5 |
| tolc family protein | DW150_18365 | Not Available | + | 4368420 - 4369736 | 49375.2 |
| hypothetical protein | DW150_18370 | Not Available | - | 4369894 - 4370847 | 38468.3 |
| gntr family transcriptional regulator | DW150_18375 | Not Available | - | 4370971 - 4371804 | 31856.5 |
| iron-containing alcohol dehydrogenase | DW150_18380 | Not Available | + | 4371881 - 4373275 | 51621.1 |
| hypothetical protein | DW150_18385 | Not Available | + | 4373358 - 4374311 | 35136.6 |
| abc transporter atp-binding protein | DW150_18390 | Not Available | - | 4374323 - 4374982 | 23931.2 |
| trna threonylcarbamoyladenosine dehydratase | DW150_18395 | Not Available | - | 4374985 - 4375707 | 27062.2 |
| cation:proton antiporter | DW150_18400 | Not Available | - | 4375694 - 4377841 | 80167.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
